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ATW could and maybe should link to the page the .swf is embedded on, somewhat like Google Images works, but I still don't have any need or desire to see Flash in my search results.
P.S. A search engine limited to 100% accessible and standards-compliant sites would be a great idea, really, but I don't see why everybody's mindset is that GOOGLE must change to suit them. That would be a great niche for a competitor to move into.