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With the completion of algorithmic transition to Bing, Yahoo! Search has merged Site Explorer into Bing Webmaster Tools. Webmasters should now be using the Bing Webmaster Tools to ensure that their websites continue to get high quality organic search traffic from Bing and Yahoo!. Site Explorer services will not be available from November 21, 2011.
[edited by: engine at 11:33 am (utc) on Nov 21, 2011]
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I think most people serious about Site Explorer type functionality, especially a service that provides all the data you really need, have already bailed ship to the vastly superior Majestic SEO.
The thing is, the third party tools show ALL links