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I also host a small non-profit subdomain not related to the main site located on the same domain which gets spidered independently of the main site. (e.g. http:*/uniquename.mydomain.com).
Both subdomain and main site have been in existence peacefully for about 8 years.
Since yesterday, Yahoo has been trying to crawl my main site files using the subdomain instead of www. Everything 404's. Quite odd how Yahoo crossed the subdomain with the main site when everything is hard linked absolute. Someone else linking to my site incorrectly using the subdomain does not appear to be an issue.
Any ideas what's going on?