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My site is in the Yahoo directory, but only comes up if I limit the search to the directory.
There are some confounding factors. All the Inktomi PFI pages that now do not display in Yahoo had been shown in Yahoo (and MSN) under domain name "company.com". Yahoo (and MSN) still displays pages for my site under the domain name "formercompany.com". A 301 redirect was set up to redirct "formercompany.com" to company.com more than 1 year ago. Google handled the 301 redirects as expected, but Inktomi (and thus Yahoo and MSN) continued to show the "formercompany.com" urls.
All the PFI pages were submitted to Inktomi under "company.com" and as I said above they displayed as "company.com"
No, I don't think so. I'm now upto checking over 50 sites to see if their INK PFI pages are still being listed in Yahoo after the "drop". I've a few more to go, but so far, so good.
This seems to be more indicitive of the "non-crawled by Yahoo, but crawled by Google" syndrome that has been seen in the past.
If you check for all the pages that Yahoo states they have from your domain, some seem to rank and some don't unless you do an extremely obscure exact search. If you do a check to see what pages are included on HotBot (for example) you only see pages that are ranking (including pages with a penalty but in the Yahoo Search DB). Theories are that content from these pages only show up on searches in Yahoo where there are no returns from Yahoo's own DB and they are pulled from some sort of Google backfill. Certainly that seems to be the case on the ones I've tested.
There hasn't been an answer from Tim or Mike on this mystery either :)
301 redirects may be the problem. Yahoo have stated that they are working on correcting a bug with following these correctly.
This brings us to the issue of sitematch again. As I understand Y's crawlers are crawling those paying sites at least once in 48 hours but on other hand it is so resources-starved that other sites are not getting crawled over months. Seeing this more people are going to join sitematch, making the situation worse for non-paying sites.
My Inktomi PFI pages are again being displayed in Yahoo (out on Sunday, back on Tuesday). However, the pages are now being displayed with "formercompany.com" instead of "company.com" in the url. (Recall "formercompany.com was 301 redirected to "company.com".)
You aren't alone. The Yahoo drama is affecting many folks here. Top listings for one of my sites disappeared Sunday after 2 years in Yahoo. We have been told over and over that sites that are "Found" by the free crawler will remain. I guess the "Free Crawler" is unable to see sites listed in it's own (Yahoo's) directory.