There are input files containing different set of sequences of characters "A,G,C,T,...from '0' to $i++; Such input files are to be fed into php script to read and count the no of characters present in it. How to achieve it? kindly help me out.
The condition is that it should skip the first line of every set of sequence and while naming the output file for each set of sequence, the first line of characters should be considered. It means that the file name should be named after the first line.
The result for each sequence should be mentioned one below other. It means that each and every sequence should be read one after another.
A Sample input file is as follows:
>B272_rhod1_eup
TTACCATGAACGGAACAGAAGGyCCCAACTTTTATGTCCCCATGTCTAACAAGACTGGGGTAGTAAGAAGCCCCTTCGACTACCCTCAGTATTACCTAGCAGAGCCATGGAAGTATTCAGTATTGGCCGCCTACATGTTCATGCTTATCATGCTTGGGCTCCCAATCAACTTCATGACCCTGTATGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTACTGAACTTGGCGTTTGCCAACCACTTTATGGTCTTGGGTGGATTCACCGTCACGCTCTACACCTCCCTCCATGGATATTTCGTGTTCGGACAGACTGGCTGCTACkTTGAAGGyTTCTTCGCTACA
>B272_Rag1_fej
GCAGTGGTCCCGCAGTTCCCGAAAAAGCAGTACGTTTCTCATTCACAATCATGAACATCAGTGTTCCCAATGGAAGCAGGACTATTAGAATTTTTGAAGAGGCCAAACCAAACTCAGAACTTTGCTGTAAACCACTTTGCCTTATGCTTGCCGATGAATCAGACCATGAAACTCTAACAGCCATCTTGAGTCCTTTGATTGCyGAGAGAGAAGCCATGAAATCCAGTGAGCTCATGyTGGAGATTGGAGGAATCCTCAGAAATTTCAAATTTGTGTTTCGTGGAACAGGGTATGATGAGAAGCTTGTGAGAGAAGTGGAAGGACTAGAAGCATCAGGCTCTGTCTATATTTGTACTCTTTGTGATGCAACTCGGCTGGAAGCTTCTCAGAACTTAGTCTTCCATTCTATTACCAGAAGTCATTCTGAGAACTTACAACGCTATGAGACATGGAGAGCAAACCCTTACCATGAAACTGT
>B272_Rhod4_eup
GCCATGGAAGTATTCAGTATTGGCCGCCTACATGTTCATGCTTATCATGCTTGGGCTCCCAATCAACTTCATGACCCTGTATGTCACCATCCAGCACAAGAAGCTCCGAACACCCTTAAACTACATCCTACTGAACTTGGCGTTTGCCAACCACTTTATGGTCTTGGGTGGATTCACCGTCACGCTCTACACCTCCCTCCATGGATATTTCATATTCGGACAGACTGGATGCTAC