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our company has a website, which is listed in the dmoz on a PR5 site and has other links from PR4+ sites. But we only have PR3 and the query link:ourdomain at Google gives back 0 results. We automatically forward our visitors from domain.com to domain.com/pages/ by Flash.
Could this be the reason of this PR3 and the links not showing?
Using flash like this can lead to poor rankings becuse of the PR loss that your flash page causes.
this example will sort of demonstrate.
if we call the site that links to you value 100 then the link to you gives your index page a value of 50. Then the flash page send value 0 to your content page. When Googlebot spiders your page it will only find the flash... it will then find no content to index and leave.
I read somewhere a while back that they had reported Google spidering flash links. I'm not sure if this is the case. I still belive links using flash are not spidered.
So it is not possible that the spider did not find the content.
That way the internal pages have more links that the index page. This may be why your internal pages come up for "keyword site:yoursite.com"