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This would seem to be the ultimate no-brainer-- right up there with the piwik "links" which even google finally figured out aren't links-- but there it is, taking up real estate.
[edited by: lucy24 at 10:53 am (utc) on Feb 8, 2013]
All links to my homepage are now missing from the report.
There is a thread on the Google Forums discussing exactly this point. Google's JohnMu replied:
This looks like an issue with how the data is displayed in Webmaster Tools, it shouldn't affect your site's crawling, indexing or ranking. I don't have any specifics at the moment, but the team is looking into the details to see what we can do here. Thanks for your patience & sorry for the confusion!
[edited by: ZydoSEO at 7:01 pm (utc) on Feb 8, 2013]
Is anyone seeing that a lot of the links they have left just link to their site ONE time?
We hope to have the normal data shown again in the near future. The data shown [in webmaster tools] is informational and does not affect your site's crawling, indexing or ranking.