I notice in Webmaster Tools I have over 1 million links counted that have not been active for over 18 months yet Webmaster Tools still reports them.
I also believe I likely have a over optimization penalty which has lasted for 18 months + plus since the top 5 keyword phrases which were number 1 for 5 years plus haven't shown anywhere on .com for over 18 months. Long tails still rank well and users actually seek out the site which keeps it still very busy because of the services provided.
There would seem to be a link if Google is still counting the links that have been gone for over 18 months from site that Tools is still reporting.
If this is the case how do I get Google to "wake up" and count correctly and also what does it say of Webmaster Tools accuracy and legitimacy ?