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Last Friday we had a lag in the link counts being reported for some sites in Webmaster Tools. You may have noticed this issue in the "Links to your site" feature if you saw link counts of zero or link counts that were much lower than what was being reported for your site previously. The good news is that the reporting system for "Links to your site" is once again running normally. We expect it will probably take a day or so before all sites in Webmaster Tools are refreshed with the most recent link counts.