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However, I am aware that a lot of WMT's features are new and in constant tuning, so let's hope things improve. There is one thing I am itching to see changed, under content analyses and Duplicate Titles / Descriptions, I wish it can be sorted by date DESC or ASC and URLs which are fixed by webmasters dropped after a week or so. Quite few bugs I know, one major one is under the later and if you have say 3 dup titles, what you see and what you hover over is different, I wish this will be fixed soon.
WMT is an awesome tool and I am sure once more features and bugs are sorted out, it'll become the best choice in building better sites in compliance with google TOS, seen what's done wrong by mistake, will show!
Well, that my two cents!