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Box 1: [somedomain.com...]
Box 2: [somedomain.com...]
Currently none of our pages are being crawled since the drop down boxes pass values and not hard links. I have created a site map with hard links and I'm waiting for the next crawl. Also, the link to the site map is in the footer which is a php include.
Will this affect spiders from seeing the sitemap?
What is the best method to get my pages crawled properly?
What you did with the sitemap was the best thing to do. Your links seems to be spiderable (there is a debate on the number of variables supported by search engines but having one or two seems to ork fine)
As for the php include it will return normal html (if you check your page source code in your browser you don't see the include code but the proper html one). So it will be find ok during the next crawl.
Leo