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Is there a way to get rid of the other domain from the serps, or is the only way to shut down that domain?
Basically I want one domain to replace the other.
I realize that may not sound like the best solution (somewhat of a hack) - but based on the fact that you actually have Yahoo indexing your site(s) - and for how many people on this board have a problem just getting included, I don't think you would want to tell Yahoo not to index one of your sites.
If you ONLY want to use one domain from here on out - they you can simply do a 301 redirect (w/out detecting users) - that way all traffic is redirected where you want it to go.