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What would be the implications of this? I mean the current pages will still be available, but nobody going to the main page would see it as it would redirect somewhere else...
Also if any of your competitors find it and reports it there might be a chance that you will be labeled with a PR 0 or something similar.
If the page/site has moved i would advise using a Server Redirect for this, and not a browser redirect.
JS is client side, so Google will most likely not see it, which would produce the effect of users seeing a different page than gbot.
If you do use JS, you would probably be best of using an external file. As lazerzubb mentioned, just because they don't parse JS, doesn't mean they can't identify a redirect embedded in the page.