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Like with my site, some directories where I am listed state the name of my site in description pages for my listings like [somedirectory.com...]
This is also treated as a mentioning of my site in the url.
Whereas site: search shows only urls within your domain
Normally the query string that I use to check how many urls are in the google index will be:
That would explain allinurl: returning more results, but in this case as stated about it seems that site: returns more results!
It's probably just that both queries go through different filters, and as we no, nothing is "ideal" so the filters just return results.