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Are you asking about pasword protected sites? Or like shopping carts? I'm not sure, sorry but someone else might come along with an answer but I need more information.
How is the Googlebot supposed to know what the password is? If it protected, Google assumes you don't want everybody to see it.
Some shopping carts can be indexed.
I've seen a lot of .asp carts and some .php carts but have yet to see any .cgi carts get indexed.
If I've got "Widgets Inc." corporate site and I have a series of pages I serve up only via SSL secured pages. (We'll say they're publically available, like signup requirements mabye...)
Will GoogleBot follow a link to an https URL?
(P.S. Mods may want to add this one to the FAQ if we get a good definitive answer)