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...using the link:my site tool and only 3 on my pages are indexed for my primary key word...
I'm confused.
link:www.mydomain.com will bring you up all the known PR4+ pages that link to your site.. either internal or external, but it doesn't relate to a keyword... just anything with a link to your domain.
Are you including a keyword in the search string?
If not, the PR4+ link rule is probably why it is not showing all your pages.
As Taxpod says, to find out all your Google-known pages, use allinurl:www.mydomain.com
In any case, text links, and particularly links in square brackets "[keyword phrase link]" in a text navigation should help. Also consider using anchors properly by using the name attribute, onmouseover, etcetera. Of course, nothing beats good page rank and quality text content.
That is all I can recommend (for free). :-)
When I enter "link:www.mysite.com", I get 86 pages. Of those 86 pages, only the first 24 show as initial results. Then I get this message:
"In order to show you the most relevant results, we have omitted some entries very similar to the 24 already displayed. If you like, you can repeat the search with the omitted results included."
I didn't check this before but after clicking the link in this message I found most of my pages were in fact in Google. What I'm not sure of is why they place so low. Is it because of their page rank? How do I get more of my content pages up into the first search?
I hope this clarifies things a bit. Thanks.