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And do either of these scripts hurt your position in search results? (I have heard that using java for example could lower your ranking).
>some scripts that can protect your website
-> These are two different things!
What's your plan? Protecting your site in general (code, images, content) or protecting a link compilation / directory? If you search for the second thing, i can help you. If you want to protect your site in general, there's no help.
Also, I was curious if using any scripts to block keyword link theftware from working would lower my ranking in Google since such scripts may be java based (hence why I originally posted my question in the Google forum).
I didn't find any of the scripting solutions completely satisfactory, this [sgtsearch.co.uk] "style tag" approach seems to be the definitive solution.