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I have read the library and some post but I haven't find simmilar thread. This seems like a most appropriate folder for this type of question.
There's all kinds of programs out there. It's hard to give a recommendation because that would depend on what's your site about.
I need information about affiliate program for sales of various items. I already said that Amazon and eBay are famous ones. But we would like to try more because i.e. Amazon is OK (trustable, although commision is low), but it don't have many items for sale.
The downside was that CP didn't have link building tools.
The upside is that there are third party generator tools now (there's an pretty clunky HTML one and PrestoGifto, which is in beta.)