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It works this way:
- you enter a url
- it does a 'links:http://yoururl" style links search on altavista and/or Google.
- it takes the site listings in the results and 'indexes' just the listings.
- it does not connect to the sites in the results, only to alta and/or google.
- it then determines what the most popular keywords are in those listings pointing at your site.
It is but one brief way that SE's can cheaply get a gauge of what a site is about.
This doesn't actually analyze themes. It analyzes your web page reputation based upon incoming links. To tell you the truth I'm not sure what the letter in the score means but they are in order of percieved "importance" on the incoming links.
If you wan't further background on this tool check out
I haven't a clue quite what the relevance is of these numbers, I presume that they are some sort of density measurement.