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I really do not understand how does inktomi rank a website. I think maybe PFI doesn't work as well as free inclusion.
Inktomi's PFI is on a fee per page basis - have you paid for one page, or all of them?
If a limited number of pages, is it possible that your phrase is not as prominent on the particular page you have selected?
I do alright with Ink's PFI, very similar placements as on other SEs... but I find it interesting that a year later none of my unpaid pages have been indexed. There's been some debate here about whether paying for Ink puts you to the back of the free inclusion list for the rest of your pages - presumably in the hope that if you've paid for one, you'll pay for the rest.