Hi there,
We have implemented an affiliated website search box and products linking (with nofollow attribute) on all of our pages including the home page (before that we were having our own products pages and internal linking to them), with that our bounce rate has been increased and its around 70% now (which used to be 30 to 40 % before), its actually not bounce rate but its being counted as we are sending the traffic to the affiliate website via one direct click. We have noticed that our inner pages as well as the home page is losing the rankings gradually, although we have been doing the same strategy for our SEO and getting the same linking as before to our website (both deep linking and linking to the home page) …
So my question from you guys is that, do you think that the bounce rate could be the reason of dropping in the rankings? If yes, is there a way to tell Google that we are using the affiliation of other site and it is actually not bounce rate. Or what if we remove the Google analytics /webmaster tools codes from our website, will Google still notice the bounce rate of our website?