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how good is frontpage with an inclusion of such a java script once the overall page structure is designed?
As good as any other WYSIWYG program out there. FrontPage will not alter your javascript. I would recommend that you place all of the javascript in an external file and not put it on the page. For example, in your
<head></head>... <script type="text/javascript" src="http://www.example.com/js/file.js"></script>
why do you recommend this?
Anything that can be placed in an external file is highly recommended. First and foremost is maintainability. With an external file, you have one file to change. When you have code on the page, then you have the tedious task of doing a find and replace routine.
JavaScript and CSS are two prime candidates for moving into external files. There are performance benefits also involved by doing this.