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FP showed about 27,000 links.
Most, if not all, internal links are relative, ie:
For some reason FP reprted 9,000 of these links as broken.
Needless to say I didn't go to the live site and try all 9,000 links. But a few showed up hundreds of times, and I did try some of those on the live site.
They all worked just fine.
Any ideas why these links are showing up as broken in the FP link check list? (I don't use FP so I may have that function name wrong)
I'd suggest checking the links live on the site using Xenu or some similar tool. No downloading required.