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I put the directory in a folder at:
mainwebsite.com/directory
Would it be better for this directory to be a subdomain like:
directory.example.com
The directory contains only websites that are related to the content of my site, but I want to be able to market the directory and charge to submit sites.
What would probably sway me back to subdirectory would be if I were going to set up SSL for payment - I'm too cheap to buy two certificates!
Mostly I have to stick with 'personal taste'.