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What's the best way to migrate parts of a site from cpanel to cpanel?

Moving from one cpanel web host account to another?

6:15 pm on Jan 1, 2013 (gmt 0)

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I'd like to move all the websites, datases and associated files, such as emails, autoresponders, email forwarders, from one cpanel web host to another.

As the sites will be moved to a sub-folder of the 'new' hosting account, I can't just do a complete standard backup and restore within the cpanel facilities I presume (otherwise they will be restored to the home directory, where there is an existing site).

How can I move all the files over in the easiest way please? There are many hundreds of them, so doing it manually would take a long time.

Is there a way of moving over the email and associated files (autoresponders, email forwarders)?

Incidentally, will scripts in cgi-bin usually continue to work on the new host or will they need to be ammended?

Thanks a million in advance.
9:03 am on Jan 2, 2013 (gmt 0)

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Not the detailed answer you are looking for, but the last time I changed webhosts I asked the new webhost to assist, and they were happy to move two problem sites for me.