If you have a few words in an adgroup that need lower/higher CPCs than the rest of the words, then managing the individual keywords CPC can be useful - it doesn't make the adgroups irrelevant, it still sits there for any keywords that you haven't added a specific CPC for.
As for CTR - average CTR of content sites is done by adgroup - not by keyword - so adgroup content site CTR is very useful to see how content sites are doing.
It's also a quick way to look at all the adgroups in a campaign to see which adgroups are doing well and which need improvement - or to compare adgroups against each other.