jimbeetle - 7:18 pm on Apr 11, 2013 (gmt 0)
My traffic is fine for now
Good, that means that there's no penalty.
I really want to believe that there's a problem about how I've done things and that the problem is not with Google.
If you've double and triple checked everything on your end -- and have had somebody else put eyeballs on it -- then the problem probably does lie with Google. It might have an awesome team of PhDs, but sometimes they can't get the simplest things right.
For example, just last month the Webmaster Tools folks couldn't deliver pages in the correct language:
Bugs in WMT.... Ooops [webmasterworld.com]
And in February they couldn't report the correct number of backlinks:
Anybody lost a ton of link data in Webmaster Tools ? [webmasterworld.com]
Usually a month doesn't go by without at least one major glitch. Again, if you feel comfortable that you have everything correct, the most I would do at this point is monitor the situation.