Hey Greg, Thanks for the reply. I have been able to move quite a few links already. There are just some that are not able to be removed or might have some link juice behind them and didn't want to totally kill them.
I have run the disavow analysis tool and is pretty intense. I only have the links from my Google webmasters, but I do not have an account with detox or moz.com etc.
Is there any other way to get all my links?