ZydoSEO - 3:55 am on Jan 15, 2013 (gmt 0)

Regardless of whether Google has decided to show disavowed links along with followed links in WMT (the same way they do nofollow links)... even though you disavowed at the domain level you will have to wait for Google to re-crawl each one of those links individually and flag it as disavowed one-by-one the same way they process individually disavowed links. Disavowing at the domain level simply reduces the amount of work that you have to do as a webmaster. I doubt very seriously it would affect how they process disavows.