kellyman - 12:10 pm on Apr 30, 2012 (gmt 0)
I Puzzled over this and then the answer was pretty easy, (well i think it is)
Its Google that has taken this stance, so check the links Google show you in their WMT. I have been totally de indexed for one of my biggest search terms not even in their serps for my keyword so now i kind of know what they are looking at
Take a subscription at majestic, look up that keyword, and reference with the Google list and i am sure you will find your answer a lot easier than guessing what was the problem
I had 11,000 Links pointing to my site I had no chance to go through them all, but now i only have 340 to check out, still a large amount of data but still this is achievable.
Ill report back later once my re inclusion request has been read and see how i got on..