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Receptional_Andy - 9:19 pm on Nov 4, 2008 (gmt 0)
As Tedster said, be very careful about assuming causation, and also about how you view your test. Essentially, you're conducting a different test now, on a page that is adding and removing affiliate links, and make other minor changes frequently ;) Also remember that the fact the rankings have been so unstable means this page is unlikely to be highly "trusted", and hence is more subject to ranking fluctuation - both because of changes you make, and changes Google make - as has been happening recently.
I placed the affiliate link once more, and the article disappeared. It was ranked #2 this time. I won't remove the affiliate link. I'll keep it and see what happens.