jtara - 10:42 pm on Mar 25, 2008 (gmt 0)

A link to my home page before would have looked link this: http://example.com/ . It is the same now.

But that's (the link URL) not what matters - it's the landing page. And your landing page has changed.

Your landing page previously was in the subdirectory - now it's the home page itself.

I don't see a fix for this, other than to just wait it out - or go back to your old structure.