I still see with affected domains that supplementals appear first followed by the non-supplemental results. Google fixed it for site: command but not for regular search.
Correct.IMO this is the problem. In all of my sites I use the same internal linking schemes. 6 of them recovered but 1 not. 6 not have webmaster tools account but that one have. 6 hosted in my country ,that one hosted in US(80% traffic from my country for all) 6 not have AdSense,that one have.