the_nerd - 7:51 pm on Jun 29, 2006 (gmt 0)

The only pages I have had spared are ones with direct links coming in to them.

did you consider the possibility that Google simply doesn't KNOW of your inner pages without external deep links, because your cloaked pages also contain the navigation/links to the inner pages? Why not add some real links from your homepage to some inner pages and see what happens?